SNP Profiles matching EQX/Z [CHA]

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_Input profile	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
1._RUQ_109	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	_	CC	AA
2._RUQ_109	_	AG	CC	CT	_	_	_	GG	_	_	_	_	CC	AA
3._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
4._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
5._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
6._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
7._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
8._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
9._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
10._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
11._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
12._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
13._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
14._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
15._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
16._EQX_/Z_[CHA]	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	_	AA	CC	AA
17._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	AT	AA	CC	AA
18._GC-01-055-3-10	CT	AG	CC	CT	CT	AA	CC	GG	CC	CC	_	AA	CC	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AT	CG	CC	CC	CC	GG	GG	CT	CC	CG	GG	CC	AA
1._RUQ_109	CC	AT	CG	CC	CC	CC	GG	GG	CT	CC	CG	GG	CC	AA
2._RUQ_109	_	_	_	_	CC	CC	GG	_	CT	CC	CG	GG	CC	AA
3._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
4._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
5._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
6._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
7._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
8._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
9._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
10._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
11._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
12._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
13._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
14._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
15._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
16._EQX_/Z_[CHA]	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
17._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA
18._GC-01-055-3-10	CC	AT	CG	CC	CC	CC	GG	AA	CT	CC	CG	GG	CC	AA

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_Input profile	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
1._RUQ_109	AA	AG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
2._RUQ_109	AA	_	-	CC	AA	CC	AC	CC	GT	CC	_	_	X_X	X_X
3._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
4._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
5._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
6._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
7._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
8._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
9._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
10._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
11._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
12._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
13._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
14._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
15._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	_	AC	AT	CG	X_X	X_X
16._EQX_/Z_[CHA]	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X
17._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	_	AC	AT	CG	X_X	X_X
18._GC-01-055-3-10	AA	GG	AA	CC	AA	CC	AC	CC	GT	AC	AT	CG	X_X	X_X

Input profile: EQX_/Z_[CHA]

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 11 Y9

Dapeng Zhang, 2016

1._EQX_/Z_[CHA] RUQ_109

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._EQX_/Z_[CHA] RUQ_109

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._EQX_/Z_[CHA]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 3 > FP

Dapeng Zhang, 2016

4._EQX_/Z_[CHA]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 13 > F

Dapeng Zhang, 2016

5._EQX_/Z_[CHA]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 15

Dapeng Zhang, 2016

6._EQX_/Z_[CHA]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 14

Dapeng Zhang, 2016

7._EQX_/Z_[CHA]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 10

Dapeng Zhang, 2016

8._EQX_/Z_[CHA]

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._EQX_/Z_[CHA] GC-01-055-3-10

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP1

10._EQX_/Z_[CHA] GC-01-055-3-10

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._EQX_/Z_[CHA] GC-01-055-3-10

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

12._EQX_/Z_[CHA] GC-01-055-3-10

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

Notes: 13 > FP4

13._EQX_/Z_[CHA] GC-01-055-3-10

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

14._EQX_/Z_[CHA] GC-01-055-3-10

97.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 15

Notes: 15

15._EQX_/Z_[CHA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 7 > FP

Dapeng Zhang, 2016

16._EQX_/Z_[CHA]

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1310 12 > F

Dapeng Zhang, 2016

17._EQX_/Z_[CHA] GC-01-055-3-10

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7 > FP3

18._EQX_/Z_[CHA] GC-01-055-3-10

97.4 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12 > FP2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25